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研究生: 邱文志
Wen-Chih Chiu
論文名稱: 鑑定Schizosaccharomyces pombe的valyl-tRNA synthetase基因功能
Functional characterization of the valyl-tRNA synthetase genes of Schizosaccharomyces pombe
指導教授: 王健家
Chien-Chia Wang
口試委員:
學位類別: 碩士
Master
系所名稱: 生醫理工學院 - 生命科學系
Department of Life Science
畢業學年度: 96
語文別: 中文
論文頁數: 102
中文關鍵詞: 酵母菌tRNA合成酶
外文關鍵詞: Valyl-tRNA synthetase, yeast
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  • 先前研究已知在Saccharomyces cerevisiae中一個VAS1基因(ScVAS1)可以藉由不同的轉錄以及轉譯起始點做出兩種valyl-tRNA synthetase (ValRS)的異構型蛋白質,這兩種異構型蛋白質分別具有粒線體以及細胞質功能。我們發現在C. albicans及Y. lipolytica中唯一的VAS1基因(CaVAS1及YlVAS1)也是由類似的機制做出兩種異構型的蛋白質,這顯示在酵母菌中這種由一個基因做出兩種異構形的ValRS是普遍存在的。此外也發現在酵母菌S. pombe的細胞核染色體中具有SpVAS1以及SpVAS2兩個不同的基因,其中SpValRS2多了一段細菌ValRS沒有的附加區段,且能夠互補ScVAS1剔除菌株之細胞質功能。雖然SpValRS1缺乏附加區段,但是其在胺基端多了一段粒線體標的訊號(mitochondrial targeting signal),功能試驗的結果顯示SpValRS1不能互補ScVAS1剔除菌株之粒線體功能。除此之外, SpVAS1及SpVAS2皆為S. pombe生長所必須之基因,因此在S. pombe中 SpValRS1很可能是粒線體的蛋白質,而SpValRS2是細胞質的蛋白質。基於這些發現我們推測SpVAS1及SpVAS2很可能是酵母菌ValRS演化的早期狀態,在演化的過程中一些酵母菌丟棄了其中一個ValRS基因,而另一個則衍生出雙重功能。


    Previous studies showed that a single yeast gene, ScVAS1, specifies both the cytosolic and mitochondrial forms of valyl-tRNA synthetase (ValRS) through alternative transcription and translation. We show here that CaVAS1 and YlVAS1, the only ValRS genes in Candida albicans and Yarrowia lipolytica, respectively, follow a similar mechanism for expression of their enzyme isoforms. It appears that one gene encoding two enzyme isoforms is a universal mechanism in yeast. Interestingly, there are two homologous genes, SpVAS1 and SpVAS2, in the chromosomes of fission yeast Schizosaccharomyces pombe. Our data showed that SpValRS2 is a cytosolic protein that possesses an N-terminal appended domain and can complement a ScVAS1 knockout strain. Unexpectedly, while SpValRS1 carries a typical mitochondria targeting signal (MTS) and lacks an appended domain, it can not complement the mitochondrial function of a ScVAS1 knockout strain. In addition, we show that both SpVAS1 and SpVAS2 are essential genes in S. pombe. It is likely that SpValRS1 is a mitochondrial protein, while SpValRS2 is a cytosolic protein in S. pombe. It is therefore likely that SpVAS1 and SpVAS2 represent an early state of the evolutionary process of ValRS. During evolution, one of the genes is lost, while the other has evolved a bifunctional preperty.

    中文摘要 i 英文摘要 ii 誌謝 iii 目錄 iv 圖表目錄 viii 縮寫檢索表 x 第一章 緒論 1 1.1 Aminoacyl-tRNA synthetases (aaRSs) 1 1.1.1 aaRS之功能 1 1.1.2 aaRSs之分類 1 1.1.3 aaRS對tRNA的辨認 2 1.2 原核生物與真核生物中的aaRS 2 1.3 Valyl-tRNA synthetase (ValRS) 3 1.3.1 ValRS之特性 3 1.3.2 S. cerevisiae ValRS之特性 3 1.3.3 S. pombe ValRS 之特性 4 1.4 酵母菌 4 1.4.1 酵母菌簡介 4 1.4.2 Saccharomyces cerevisiae (麵包酵母) 5 1.4.3 Candida albicans (白色念珠菌) 5 1.4.4 Yarrowia lipolytica 5 1.4.5 Schizosaccharomyces pombe 6 1.5 研究目的 7 第二章 材料與方法 8 2.1 菌株、載體及培養基 8 2.2 質體之選殖 9 2.3 大腸桿菌勝任細胞的製備與轉型作用 10 2.3.1大腸桿菌勝任細胞的製備 10 2.3.2 大腸桿菌勝任細胞的轉型作用(transformation) 11 2.4 酵母菌勝任細胞的製備與轉型作用 11 2.4.1 酵母菌勝任細胞的製備 11 2.4.2 酵母菌勝任細胞的轉型作用 12 2.5 功能性互補試驗(Complementation)―測試細胞質功能 12 2.6 功能性互補試驗(Complementation)―測試粒線體功能 14 2.7 定點突變(Site-directed Mutagenesis) 15 2.8 蛋白質製備(Protein preparation) 16 2.8.1 玻璃珠(glass beads)撞擊法 16 2.8.1 三氯醋酸(trichloroacetic acid)沉澱法 17 2.9 SDS-PAGE之蛋白質分子量分析 18 2.10 西方點墨法(Western Blotting) 19 2.11 S. pombe基因剔除菌株製備 20 2.12 SpVAS1/2標記菌株(tagging strain)製備 23 2.13 酵母菌菌落PCR (Colony PCR) 24 2.14 酵母菌蛋白質的表現與純化 25 2.15 胺醯化作用分析 28 第三章 結果 29 3.1 酵母菌 valyl-tRNA synthetase 之序列分析 29 3.2 CaVAS1同時具有細胞質及粒線體的功能 30 3.3 鑑定CaVAS1的轉譯起始密碼 30 3.4 YlVAS1同時具有細胞質及粒線體功能 31 3.5 鑑定YlVAS1的轉譯起始密碼 32 3.6 SpVAS1無法互補ScVAS1剔除菌株而SpVAS2可以互補ScVAS1剔除菌株的細胞質功能 32 3.7 SpValRS1之胺基端具有粒線體標的訊號 33 3.8 SpValRS1位於粒線體而SpValRS2 位於細胞質 34 3.9 S. pombe 中SpVAS1以及SpVAS2 之蛋白質表現 34 3.10 S. pombe 中SpVAS1之mRNA量較SpVAS2低 34 3.11 SpVAS1以及SpVAS2皆為必需基因 35 3.12具有tRNA鍵結能力的蛋白質或附加區段能使EcValRS互補酵母菌中之細胞質ValRS功能 36 3.13 粒線體標的訊號(MTS)能使原核生物之ValRS互補酵母菌中之粒線體ValRS功能 36 3.14 CaValRS的點突變造成粒線體功能喪失 37 3.15 CaValRS之胺醯化作用分析 38 第四章 討論 39 4.1 酵母菌普遍使用一個基因做出兩種異構型ValRS 39 4.2 SpVAS1及SpVAS2之功能分析 39 4.3 S. pombe 有兩個ValRS的基因可能是演化的早期狀態 40 4.4 ValRS與tRNAval的辨認 42 4.5 CaValRS1辨認粒線體及細胞質中tRNA之不同 42 第五章 參考文獻 44 附錄 76

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