| 研究生: |
陳韋龍 Wei-long Chen |
|---|---|
| 論文名稱: |
利用決策樹分析禽流感病毒對人類感染力的胺基酸變異情況 Selection of discriminative features in HA of H5N1 binding to sialic acid by decision tree |
| 指導教授: |
洪炯宗
Jorng-Tzong Horng |
| 口試委員: | |
| 學位類別: |
碩士 Master |
| 系所名稱: |
資訊電機學院 - 資訊工程學系 Department of Computer Science & Information Engineering |
| 畢業學年度: | 94 |
| 語文別: | 英文 |
| 論文頁數: | 47 |
| 中文關鍵詞: | 決策樹 、胺基酸 、禽流感 、病毒 |
| 外文關鍵詞: | sialic acid, H5N1, HA, discriminative features, decision tree |
| 相關次數: | 點閱:5 下載:0 |
| 分享至: |
| 查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報 |
近日,H5N1流感病毒對人類的引響與日俱增, 從禽鳥上而遭受感染的患者也越來越多。倘若禽流感病毒與其他人類流感病毒混合突變,進而演變成人類傳染人類,那可能變成一場大的災難。 Hemagglutinin (HA) 在流感病毒中,扮演著與sialic acid結合的表面醣蛋白。因此,HA蛋白與sialic acid 的結合,在病毒侵入人類呼吸道上體是非常重要的。在本文中,我們從NCBI中的Influenza Virus Resource database裡,選出了497條H5N1 HA 蛋白質序列,並使用決策樹的方式,在HA蛋白質序列中,找出有可能引響HA蛋白與sialic acid結合的胺基酸。而在最後,我們找到了4個蛋白質位子,分別是第54, 55, 241, 281的位子上,可能在感染人類上扮演重要的腳色。
Recently, the H5N1 virus has increasingly impacted to human life. It because that there are more and more people get infected. If the genome of the influenza virus recombined with the gene segments from other types of influenza viruses and caused infection through human to human, there will be a serious disaster. Hemagglutinin (HA) is the surface glycoprotein, and it will bind to sialic acid on the host cell surface receptors. So, the combination of the HA and sialic acid is important for the influenza infecting human. In this study, we select 497 sequences of the HA protein from NCBI Influenza Resource database, and use decision tree to select the key amino acid which would influence the binding of HA to sialic acid in the HA protein sequences. At the end, we have found 4 amino acid position at 54, 55, 241, and 281, those maybe important roles of the affection by H5N1 influenza virus.
References
Bender, C., H. Hall, et al. (1999). "Characterization of the surface proteins of influenza A (H5N1) viruses isolated from humans in 1997-1998." Virology 254(1): 115-23.
Bush, R. M., C. A. Bender, et al. (1999). "Predicting the evolution of human influenza A." Science 286(5446): 1921-5.
Claas, E. C., A. D. Osterhaus, et al. (1998). "Human influenza A H5N1 virus related to a highly pathogenic avian influenza virus." Lancet 351(9101): 472-7.
Frank, I. H. W. a. E. (2000). Data Mining: Practical Machine Learning Tools and Techniques with Java Implementations, Morgan Kaufmann.
Guan, Y., K. F. Shortridge, et al. (1996). "Emergence of avian H1N1 influenza viruses in pigs in China." J Virol 70(11): 8041-6.
Hoffmann, E., A. S. Lipatov, et al. (2005). "Role of specific hemagglutinin amino acids in the immunogenicity and protection of H5N1 influenza virus vaccines." Proc Natl Acad Sci U S A 102(36): 12915-20.
Hulse-Post, D. J., K. M. Sturm-Ramirez, et al. (2005). "Role of domestic ducks in the propagation and biological evolution of highly pathogenic H5N1 influenza viruses in Asia." Proc Natl Acad Sci U S A 102(30): 10682-7.
Iwatsuki-Horimoto, K., R. Kanazawa, et al. (2004). "The index influenza A virus subtype H5N1 isolated from a human in 1997 differs in its receptor-binding properties from a virulent avian influenza virus." J Gen Virol 85(Pt 4): 1001-5.
Jenuth, J. P. (2000). "The NCBI. Publicly available tools and resources on the Web." Methods Mol Biol 132: 301-12.
Julenius, K., A. Molgaard, et al. (2005). "Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites." Glycobiology 15(2): 153-64.
Li, K. S., Y. Guan, et al. (2004). "Genesis of a highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia." Nature 430(6996): 209-13.
Ng, E. K., P. K. Cheng, et al. (2005). "Influenza A H5N1 detection." Emerg Infect Dis 11(8): 1303-5.
Organization, W. H. (2005). "Evolution of H5N1 avian influenza viruses in Asia." Emerg Infect Dis 11(10): 1515-21.
Plotkin, J. B., J. Dushoff, et al. (2002). "Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus." Proc Natl Acad Sci U S A 99(9): 6263-8.
R. Gupta, E. J. a. S. B. (2004). Prediction of N-glycosylation sites in human proteins. In preparation.
Suarez, D. L., M. L. Perdue, et al. (1998). "Comparisons of highly virulent H5N1 influenza A viruses isolated from humans and chickens from Hong Kong." J Virol 72(8): 6678-88.
Thompson, J. D., D. G. Higgins, et al. (1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice." Nucleic Acids Res 22(22): 4673-80.