跳到主要內容

簡易檢索 / 詳目顯示

研究生: 呂偉立
Wei-Li Lu
論文名稱: DNA型式碳水化合物抗原之生物偵測器的開發及應用
Aptamer-Based Probes for Carbohydrate Antigens and Its Application
指導教授: 侯敦仁
Duen-Ren Hou
林俊成
Chun-Cheng Lin
口試委員:
學位類別: 碩士
Master
系所名稱: 理學院 - 化學學系
Department of Chemistry
畢業學年度: 92
語文別: 英文
論文頁數: 104
中文關鍵詞: 碳水化合物抗原生物偵測器
外文關鍵詞: SELEX, carbohydrate antigen, Aptamers, Tn
相關次數: 點閱:15下載:0
分享至:
查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報
  • 在哺乳類動物的腫瘤細胞表面都會暴露出大量不同於一般正常細胞的醣體,因此我們希望能藉由將本實驗室之前所研究的碳水化合物腫瘤抗體如結腸癌中的Tn引進SELEX(Systemic Evolution of Ligands by EXponential Enrichments)系統來開發出對此類不正常醣體具有高度辨識能力的aptamers(經過SELEX系統所篩選出對特定化合物具有強作用力之單股去氧核醣核酸),希望能以此來開發針對不正常醣體具有高度專一性之生物偵測器,將此利用在醫療的診斷上,期望可達到在癌症發生初期時即可偵測出病變的診斷工具。


    Cell surface carbohydrates have been shown to play essential biological roles in divers biological phenomena such as molecular recognition, used the carbohydrate antigen (ex. Tn antigen found in gastrointestinal tissues) to distinguish cancer cell with normal cell. Then used Tn antigen as target molecular in the SELEX(Systemic Evolution of Ligands by EXponential Enrichments), found the aptamers(isolation of DNA ligands out of the random sequence pool). The aptamers have high affinity and selectivity to Tn antigen. The aptamers can be applied to develop sensor for Tn antigen. We wish the sensor could be used to diagnostic cancer early.

    目錄 摘要……………………………………………………I 謝誌 …………………………………………………II 目錄…………………………………………………III 圖表目錄 ……………………………………………IV 簡寫表…………………………………………………V 第一章 序論………………………………………01 1-1 細胞表面碳水化合物的分佈…………………01 1-2 碳水化合物與癌症……………………………02 1-3 碳水化合物抗原之生物檢測系統……………05 1-4 SELEX之Aptamers與偵測器………………….09 1-5 碳水化合物與SELEX系統之結合…………….10 1-6 Aptamer在DNA分子開關型偵測器上之應用…14 第二章 結果與討論……………………………….17 2-1 合成Tn抗原……………………………………17 2-2 SELEX所使用之材料與流程………………….19 2-3 鑑定SELEX篩選出之DNA序列使用之方法……32 2-4 結論…………………………..............41 第三章 實驗部份………………………………….42 3-1 一般合成實驗方法……………………………42 3-2 實驗步驟及光譜資料………………………..43 3-3 SELEX所使用之實驗方法…………………….49 3-4 SELEX實驗步驟及數據資料………………….51 3-5 經SELEX所篩選出的DNA序列之鑑定…………57 參考文獻……………………………………………61 附錄…………………………………………………68

    參考文獻:
    1 (a) Koganty, R. R.; Reddish, M. A. and
    Longenecker, B. M. Drug Discovery
    Today 1996, 1, 190. (b) Fung, P. Y. S.;
    Madej, M.; Koganty, R. R.;
    Longenecker, B. M. Cancer Res. 1990, 50,
    4308. (c) MacLean, G. D.; Bowen-
    Yacashin, M. B.; Samuel, J.; Meikle, A.;
    Sturat, G.; Nation, J.; Poppema,
    S.; Jerry, M.; Koganty, R. R.; Wong, T.;
    Longenecker, B. M. Cancer Immunol.
    Immunther. 1992. 11, 292. (d) MacLean, G. D.;
    Redish, M.; Koganty, R. R.;
    Wong, T.; Hanhi, S.; Smolenski, M.; Samuel,
    J.; Nabholtz, J. M.;
    Longenecker, B. M. Cancer Immunol.
    Immunother. 1993, 36, 215. (e)
    Longenecker, B. M.; MacLean, G. D. The
    Immunologist 1993, 1, 89.
    2 (a) Mahal, L. K.; Yarema, K. J.; Bertozzi, C.
    R. Science 1997, 276, 1125.
    (b) Lemieux, G. A.; Bertozzi, C. R. Chem.
    Biol. 2001, 8, 265.
    3 Handall, R. L.; Chappell, M. D.
    Glycochemistry: Principles, Synthesis,
    and Application Wang, P. G.; Bertozzi, C. R.
    Ed. Marcel dekker, Inc.,
    NEW YORK, 2001, pp. 177-220.
    4 Tomas, D. B.; Winzler, R. J. J. Biol. Chem.
    1969, 244, 5943.
    5 (a) Pon, R. A.; Lussier, M.; Yang, Q.-L.;
    Jennings, H. J. J. Exp. Med.
    1997, 185, 1929. (b) Frosch, M.; Gorgen, I;
    Boulnois, G. T.; Bitter-
    Suermann, D. Proc. Natl. Acad, Sci. U. S. A.
    1985, 82, 1194. (c) Liu, T.;
    Guo, Z.; Yang, Q.; Sad, S.; Jennings, H. J.
    J. Biol. Chem. 2000, 275, 32832.
    6 (a) Kuduk, S. D.; Schwarz, J. B.; Chen, X.
    T.; Glunz, P. W.; Sames, D.;
    Ragupathi, G.; Livingston, P. O.;
    Danishefsky, S. J. J. Am. Chem. Soc.
    1998, 120, 12474. (b) Schwarz, J. B.; Kuduk,
    S. D.; Chen, X. T.; Sames, D.;
    Glunz, P. W.; Danishefsky, S. J. J. Am.
    Chem. Soc. 1999, 121, 2662.
    7 GLYCOBIOLOGY AND MEDICINE John S. Axford. Ed.
    Kluwer Academic/Plenum, Inc.
    New York, 2003, pp. 163-165.
    8 (a) Tuerk, C.; Gold, L. Science 1990, 249
    (4968), 505. (b) Ellington, A.
    D.; Szostak, J. W. Nature 1990, 346, 818.
    9 (a) Yoshihiro, I.; Naok, K.; Yukio, I.
    Methods 2000, 22, 107. (b)
    Vianini, E. ; Palumbo, M.; Gatto, B. Bioorg.
    Med. Chem. 2001, 9, 2543. (c)
    Williams, K. P.; Liu, X-H.; Schumacher, T.
    N. M.; Lin, H. Y.; Ausiello, D.
    A.; Kim, P. S.; Bartel, D. P. Proc. Natl.
    Acad. Sci. U. S. A. 1997, 94,
    11285.
    10 (a) Gold, L. J. Biol. Chem. 1995, 270, 13581.
    (b) Drolet, D. W.; Moon-
    McDermott, L.; Roming, T. S. Nat.
    Biotechnol. 1996, 14, 1021. (c) Conrad,
    R.; Ellington, A. D. Anal. Biochem. 1996,
    242, 261. (d) Potyrailo, R. A.;
    Conrad, R. C.; Ellington, A. D.; Hieftje, G.
    M. Anal. Chem. 1998, 70, 3419.
    11 Nelson, D. L.; Michael, M. Lehninger
    Principles of Biochemistry. Worth,
    Inc., New York, 2000, pp. 1129-1148.
    12 (a) Rajendran, M.; Ellington, A. D. Optical
    Biosensors: Present and
    Future. Elsevier Science BV, Amsterdam,
    2002, pp. 369-396. (b) Rajendran,
    M.; Ellington, A. D. Comb. Chem. High
    Throughput Screen 2002, 5, 263.
    13 Mhlanga, M. M.; Malmberg, L. Methods 2001,
    25, 463.
    14 Miyawaki, A.; Llopis, J.; Helm, R.;
    McCaffery, J. M.; Adams, J. A.;
    Ikura, M.; Tsien, R. Y. Nature 1997, 388,
    882.
    15 (a) Thompson, R. B.; Maliwal, B. P.;
    Feliccia, V. L.; Fierke, C. A.;
    McCall, K. Anal. Chem. 1998, 70, 4717. (b)
    Walkup, G. K.; Imperiali, B.
    J. Am. Chem. Soc. 1996, 118, 3053. (c)
    Godwin, H. A.; Berg, J. M. J. Am.
    Chem. Soc. 1996, 118, 6514.
    16 (a) Hesselberth, J.; Robertson, M. P.;
    Jhaveri, S.; Ellington, A. D. Rev.
    Mol. Biotechnol. 2000, 74, 15. (b)
    Jayasena, S. D. Clin. Chem. 1999, 45,
    1628.
    17 Wilson, D. S.; Szostak, J. W. Annu. Rev.
    Biochem. 1999, 68, 611.
    18 (a) Li, J.; Fang, X.; Schuster, S.; Liu, X.;
    Tan, W. Angew. Chem. Int. Ed.
    Engl. 2000, 39, 1049. (b) Fang, X.; Li, J.
    J.; Tan, W. U. Anal. Chem.
    2000, 72, 3280.
    19 (a) Famulok, M.; Mayer, G.; Blind, M. Acc.
    Chem. Res. 2000, 33 (9), 591.
    (b) Wilson, D. S.; Szostak, J. W. Annu. Rev.
    Biochem. 1999, 68, 611.
    20 Drolet, D. W.; Moon-McDermott, L.; Romig, T.
    S. Nat. Biotechnol. 1996,
    14, 1021.
    21 (a) Lee, M.; Walt, D. R. Anal. Biochem.
    2000, 282, 142. (b) Rajendran, M.;
    Ellington, A. D. Optical Biosensors:
    Present and Future In Ligler, F. S.;
    Rowe Taitt, C. A. eds, Elsevier Science BV,
    Amsterdam, 2002, pp. 369-396.
    (c) McCauley, T. G.; Hamaguchi, N.; Stanton,
    M. Anal. Biochem. 2003, 319,
    244.
    22 Yang, Q. ; Goldstein, I. J. ; Mei, H. Y. ;
    Engelke, D. R. Proc. Natl.
    Acad. Sci. U. S. A. 1998, 95,
    5462.
    23 Kawakami, J.; Kawase, Y.; Sugimoto, N. Anal.
    Chem. Acta 1998, 365, 95.
    24 Jeong, S.; Eom, T. Y.; Kim, S. J.; S.-W.
    Lee.; Y u, J. Biochem. Biophys.
    Res. Commun. 2001, 281, 237.
    25 (a) Rajendran, M.; Ellington, A. D. Nucleic
    Acid Res. 2003, 31, 5700. (b)
    Tyagi, S.; Kramer, F. R. Nat. Biotechnol.
    1996, 14, 303. (c) Nutiu, R.;
    Li, Y. Nucleic Acids Res. 2002, 30, E94.
    (d) Marras, S. A.; Kramer, F.
    R.; Tyagi, S. Methods Mol. Biol. 2003, 212,
    111.
    26 (a) Jhaveri, S.; Kirby, R.; Conrad, R.;
    Maglott, E.; Bowser, M.; Kennedy,
    R.T.; Glick, G.; Ellington, A. D. J. Am.
    Chem. Soc. 2000, 122, 2469-2473.
    (b) Jhaveri, S.; Rajendran, M.; Ellington,
    A. D. Nat. Biotechnol. 2000,
    18, 1293.
    27 (a) Tyagi, S.; Kramer, F. R. Nat.
    Biotechnol. 1996, 14, 303. (b)
    Tyagi, S.; Marras, S. A. E.; Krame, F. R.
    Nat. Biotechnol. 2000, 18,
    1191.
    28 Nutiu, R.; Li, Y. Nucleic Acids. Res. 2002,
    30, E94.
    29 Nutiu, R.; Li, Y. J. Am. Chem. Soc. 2003,
    125, 4772.
    30 Cai, J.; Davison, B. E.; Ganellin, C. R.;
    Thaisrivongs, S.; Wibley, K. S.
    Carbohyd. Res. 1997, 300, 109.
    31 (a)Nashed, M. A.; El-Sokkary, R. I.; Rateb,
    L. Carbohydr. Res. 1984, 131,
    47. (b) Ahn, Y. M.; Gray, G. R. Carbohydr.
    Res. 1996, 296, 215.
    32 Wang, L.-X.; Lee, Y. C. J. Chem. Soc.
    Perkin Trans. 1 1996, 581.
    33 Igor, A. K.; Shenlan, M.; Yue, Xu.; Xuefei
    Huang.; Lac Lee.; Pamela S.
    S.; Changshou. Gao.; Avery R.; Coyle, Kim
    D.; Janda.; Chi-Huey Wong.
    Chembiochem. 2001, 2, 741.
    34 Blix, G. Acta. Chem. Scand. 1948, 2, 467.
    35 Ramachandran, A.; Flinchbaugh, J.; Ayoubi,
    P.; Olah, G. A.; Malayer, J.
    R. Biosensors Bioelectronics 2004, 19, 727.
    36 Sambrook, J.; Fritsch, E. F.; Maniatis, T.
    Molecular Cloning A Laboratory
    Manual/Second Edition Nolan, C. Ed. Clod
    Spring Harbor Laboratory, Inc.
    United States of America, 1989, pp. E11-E15.
    37 (a) Smith, L. M.; Fung, S.; Hunkapiller, M.
    W.; Hunkapiller, T. J.; Hood,
    L. E. Nucleic Acids Res. 1985, 13, 2399.
    (b) Imanishi, Y.; Ito, Y.;
    Suzuki, A.; Kawazoe, N. Bioconjug. Chem.
    2001, 12, 850.
    38 (a) Kool, E. T.; Ohmichi, T.; Maki, A. Proc.
    Natl. Acad. Sci. U. S. A.
    2002, 99, 54. (b) Uhlen, M.; Wahlberg,
    J.;Lunderberg, J.; Hultman, T.
    Proc. Natl. Acad. Sci. U. S. A. 1990, 87,
    6569. (c) Lundeberg, J.; O’
    Meara, D.; Nilsson, P.; Nygren, P.; Uhlen,
    M. Anal. Biochem. 1998, 255,
    195.
    39 (a) Ellington, A. D.; Rajendran, M. Nucleic
    Acids Res. 2003, 31, 19. 5700.
    (b) Ellington, A. D.; Matthew, L. Bioorg.
    Med. Chem. 2001, 9, 2581. (c)
    Toole, J. J.; Bock, L. C.; Griffin, L. C.;
    Latham, J. A.; Vermaas, E. H.
    Nature 1992, 355, 564.
    40 Ellington, A. D.; Szostak, J. W. Nature
    1992, 355, 850.

    QR CODE
    :::